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The RNAquarium Pipeline
RNAquarium performs species-scale RNA-seq analysis from the NCBI Sequence Read Archive (SRA). Through a multi-stage host filtering pipeline, it processes zebrafish transcriptomes to identify viral sequences, characterise host gene expression, and catalogue microbial diversity across thousands of public datasets.
77,329
SRA experiments
33M+
transcripts
2,469
bioprojects
20
viruses
GitHub Repository
Explore the RNAquarium source code, pipeline configuration, and documentation.
Zebrahub
A comprehensive atlas of zebrafish development with single-cell transcriptomic data and imaging resources.
Our Team
Meet the researchers and developers behind the RNAquarium project
Research Lead Team
Keir Balla
Duo Peng
Yasin Şenbabaoğlu
Bioinformatics Team
Yttria Aniseia
Eric Waltari
Max Frank
Gibraan Rahman
Andy Zhou
Yang-Joon Kim
Hejin Huang
Web Development Team
Leandro Lima
Wellington Rutes
Contact Us
Get in touch with the RNAquarium team